Occurrence dataset Registered November 22, 2021

    Bacterial 16S Ribosomal RNA RefSeq Targeted Loci Project

    Description

    The small subunit ribosomal RNA is a useful phylogenetic marker that has been used extensively for evolutionary analyses. The RefSeq dataset contains curated 16S ribosomal RNA sequences that correspond to bacteria type materials. The RefSeq records may contain corrections to the sequence or taxonomy as compared to the original INSD submission, and may have additional information added that is not found in the original. All sequences will have the same project ID and can be found as such. Database URL: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA33175.

    Metrics

    Bibliography

    • O'Leary, N.A., Wright, M.W., Brister, J.R., Ciufo, S., Haddad, D., McVeigh, R., Rajput, B., Robbertse, B., Smith-White, B., Ako-Adjei, D., Astashyn, A., Badretdin, A., Bào, Y., Blinkova, O., Brover, V., Chetvernin, V., Choi, J., Cox, E., Ermolaeva, O.D., Farrell, C.M., Goldfarb, T., Gupta, T., Haft, D.H., Hatcher, E., Hlavina, W., Joardar, V.S., Kodali, V.K., Li, W.J., Maglott, D.R., Masterson, P., McGarvey, K.M., Murphy, M.R., O'Neill, K., Pujar, S., Rangwala, S.H., Rausch, D., Riddick, L.D., Schoch, C.L., Shkeda, A., Storz, S.S., Sun, H., Thibaud-Nissen, F., Tolstoy, I., Tully, R.E., Vatsan, A.R., Wallin, C., Webb, D., Wu, W.X., Landrum, M.J., Kimchi, A., Tatusova, T.A., DiCuccio, M., Kitts, P.A., Murphy, T.D., Pruitt, K.D. (2016). Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation. Nucleic Acids Research, 44, D733 - D745.
      Identifier: DOI:10.1093/nar/gkv1189Google Scholar
    • Conrad L Schoch, Stacy Ciufo, Mikhail Domrachev, Carol L Hotton, Sivakumar Kannan, Rogneda Khovanskaya, Detlef Leipe, Richard Mcveigh, Kathleen O’Neill, Barbara Robbertse, Shobha Sharma, Vladimir Soussov, John P Sullivan, Lu Sun, Seán Turner, Ilene Karsch-Mizrachi, NCBI Taxonomy: a comprehensive update on curation, resources and tools, Database, Volume 2020, 2020, baaa062
      Identifier: DOI:10.1093/database/bax072Google Scholar

    Contacts

    • Richard McVeigh

      Originator
      Organization
      National Center for Biotechnology Information
      Position
      Prokaryote RefSeq curator
      Address
      8600 Rockville Pike
      Roles
      Originator
      Email

    GBIF registration

    Registration date
    November 22, 2021
    Metadata last modified
    May 07, 2025
    Publication date
    May 01, 2025
    Hosted by
    GBIF Secretariat
    Installation
    GBIF Hosted Datasets
    Endpoints
    Darwin Core Archive
    Preferred identifier
    10.15468/k2c8en
    Alternative identifiers

    Citation

    McVeigh R (2025). Bacterial 16S Ribosomal RNA RefSeq Targeted Loci Project. National Center for Biotechnology Information (NCBI). Occurrence dataset https://doi.org/10.15468/k2c8en accessed via GBIF.org on 2025-05-17.